
VSTN Transfer Pricing Update | Series – 2: Decoding the New Safe Harbour Rules
This second alert on draft Income Tax Rules, 2026 turns the spotlight on the key amendments to India’s Safe Harbour Rules, unpacking how the updated definitions, eligibility conditions, and compliance timelines reshape the landscape for eligible assessees.
Introduction of Form 49
1. Streamlined Compliance: A single Form (Form 49) now replaces multiple legacy forms (Form 3CEFA, 3CEFB & 3CEFC), consolidating the entire Safe Harbour application into one unified filing
2. Form 49 timelines- IT services get flexibility (file anytime in Tax Year 1 or up to 30 June of following year). For all other categories, the deadline stays tied to the ITR due date
3. Form 49 introduces a simplified structure by grouping all safe harbour transactions into three broad buckets- Eligible International transactions, Eligible SDT, & Eligible businesses
4.The new form brings in threshold‑driven confirmations for specified transactions, marking a shift from the earlier forms that did not mandate such disclosures.
5.Additional requirement to upload the accountant’s certificate certifying the cost pool allocation in relation to receipt of Low value adding Intra Group services
Key Safe Harbour Reforms
In line with the safe harbour reforms introduced in the Budget, relevant updates have been incorporated in the draft IT Rules
1. Separate, simplified rule now introduced exclusively for the SH procedure relating to IT services, along with automated verification process
2. Responsibility for identifying “low-risk” players has moved from AO/TPO to DGIT (Systems) for IT, ITeS, and KPO—replacing manual scrutiny with automated, tech-driven validation
3. Unified Margin with increase in threshold: All IT services (Software, ITeS, KPO, R&D for SWD) merged into a single category with a reduced 15.5% SH margin accompanied by a substantial raise in threshold to ₹2,000 Crore, bringing more mid-sized firms into the fold.
4. 5-Year Lock-in: Once applied, the safe harbour for IT services can be continued for 5 consecutive years.
5. New Sector Incentives: SH rates of 15% margin on cost for Data Centres and 2% of gross receipts for custom bonded warehousing.
More alerts related to the other transfer pricing aspects in the draft Income Tax Rules to follow in next instalment of this series.
Draft Income Tax Rules – Update on Safe Harbour Rules
1) Provision of IT services*; 2) Others: – Provision of contract R&D services wholly or partly relating to generic pharmaceutical drugs – Manufacturing & export of core auto components – Manufacturing & export of non-core auto components – Provision of data centre services (NEW) – Advancing intra-group loans by eligible assessee – Providing corporate guarantee by eligible assessee – Receipt of low value-adding intra-group services
*Common category for Software development, ITeS, KPO & Contract R&D in relation to software development
Changes in Form No.49
| Particulars | Additional requirements |
|---|---|
| 1. IT services | Tax Years for which option is to be exercised to be included |
| 2. Transaction categories | Clubbing of 4 service categories into IT services, inclusion of Data centre services and Eligible business of component storage in bonded warehouses |
| 3. Advancing of intra-group loans | • If the loan is in foreign currency, there is a checkbox requirement (Yes/No) to confirm whether the total loan advanced to all AEs exceeds INR 250 crores as on 31st March of the tax year • In cases where credit rating is not available and the loan is in Indian currency, there is a checkbox requirement (Yes/No) to confirm that the total loan advanced to all AEs does not exceed INR 100 crores to determine the eligibility. |
| 4. Provision of Corporate Guarantee | • Checkbox requirement (Yes/No) to confirm whether the amount guaranteed exceeds INR 100 crores • Further, AE credit rating and credit rating agency to be disclosed only if amount guaranteed exceeds INR 100 cr. |
| Particulars | Additional requirements |
|---|---|
| 5. Receipt of low value-adding intra-group services |
Checkbox requirement (Yes/No) to confirm if the value of transactions including markup ≤ 5% exceeds INR 10 crores, to determine eligibility for SH Additional requirement to upload the accountant’s certificate certifying the cost pool allocation Specific requirement to disclose the Date and UDIN of accountant’s certificate Amount of EIT excluding mark-up and amount of EIT including mark-up to be separately shown |
| 6. ESDT (Supply of electricity or transmission of electricity or wheeling of electricity) | The old form required details of relevant order of the Appropriate Commission determining the tariff or approving the methodology for determination of the tariff, whereas the new form specifically asks for the date, type and validity of such order |
| 7. ESDT (Purchase of milk and milk products) |
Earlier, taxpayers were required to furnish exhaustive details regarding the quantity, rate, and milk-equivalent of dairy products purchased, along with verification of uniform payment to members. Such granular details are no longer required in Form 49. Instead, Form 49 seeks procedural confirmations on whether the procurement rate is fixed based on quality (SNF content) and is independent of milk volume, shareholding, and voting power of the members. |
| 8. Eligible business (sale of raw diamonds and component storage in bonded warehouse) |
Confirmation (yes/no) that: – No further deduction under section 28 to 34, 44 to 49, 51,52, Schedule IX and X has been claimed – Written down value of assets is deemed to have been calculated as if the assessee had claimed the depreciation – No set off of unabsorbed depreciation under section 33(11) or carried forward loss under section 112(1) has been claimed – No set off of loss from other business under section 108(1) or other head under section 109 has been claimed |
Hence, the new form outlines the mandatory deduction and set-off restrictions applicable when opting for SH for EB. These restrictive provisions are designed to ensure that the profit% of 4%/2% is final, preventing taxpayers from further reducing their taxable income through additional claims
New Rule 91 on SH procedure for IT services
A separate, simplified rule has now been introduced exclusively for the SH procedure relating to IT services. Under the earlier framework, the procedural requirements for all eligible international transactions were consolidated within a single rule, without distinction between different categories. The new structure therefore streamlines compliance by carving out a dedicated procedure specifically for IT services, as promised by the 2026 Budget. The key provisions are outlined below:
1. Duration
- Once exercised validly, the SH remains in force for 5 consecutive tax years.
- If an Assessee withdraws their option (by furnishing a declaration), they cannot re-exercise it until the original 5-year period expires.
2. Application filing
- Form No. 49 to be submitted and verified electronically (Digital Signature or EVC) to the DGIT (Systems).
- Must be filed during the first tax year and not beyond 30th June of the following year
3. Automated verification & approval process
- The system verifies if the assessee and transactions are ‘eligible’ and the option is valid.
- Acceptance or rejection will be communicated within two months from the end of the filing month.
- Application will be rejected only upon providing specific reasons and after giving an opportunity to the assessee to rectify any identified defects.
4. Annual compliance
- For each of the four years following the first year, a statement detailing quantum of eligible transactions and profit margins achieved must be filed before filing the tax return (Format of the statement yet to be specified).
- Upon acceptance, the assessee must file tax returns for each of the 5 years as per SH provisions on or before the due date for filing return of income
- The Assessing Officer can make reference to the TPO for transactions other than the eligible IT services covered by the SH.
Further it is specified that the DGIT (Systems) with the approval of CBDT can lay down any further data structure, formats or procedures in connection with furnishing/verification of the above documents, including any required modifications.
For an assessee to qualify as an eligible assessee in respect of IT services, the conditions relating to assumption of only insignificant risks and the foreign principal performing the economically significant functions will continue to apply. In this context, actual conduct takes precedence over contractual terms.
The responsibility to determine whether an assessee is an eligible assessee, bearing insignificant risk, for contract R&D lies with AO or TPO or DGIT (systems) whereas it has been shifted from AO/TPO to DGIT (Systems) for software development, ITeS & KPO services.
Note: As the new category of Data center services are not covered under the provision of IT services, one has to follow the general procedures relating to the other eligible transactions, which involve verification of the SH Application by tax authorities.
Relaxation in Accountant definition
To support the government’s vision of home-grown accounting and advisory firms to become global leaders, the definition of Accountant for the purposes of SH Rules has been rationalised, as announced in the Budget. The definition of Accountant is relied in the SH Rules only in connection with the management services safe harbor, for certification of the cost pool. The earlier rule provided a preference to Global firms for the certification as it requires the firm certifying the same to be present in more than 2 countries.
Currently the requirement to have presence in more than two countries has been removed for Indian Chartered Accountants who are members or partners in accountancy or valuation services entities. This condition is now applicable only in the case of persons recognised for undertaking cost certification by the Government of the country where the associated enterprise is registered or incorporated or any of its agencies.
Further the revenue threshold to be fulfilled by an Accountant has been relaxed:
- Accountant pursuing the profession of accountancy individually or is a valuer – Annual professional receipts in the year preceding the year in which cost certification is undertaken > INR 50 lakhs (Old rule- Rs. 1 crore);
- Member or partner in an accountancy or valuation services entity – Annual receipt of the entity in the year preceding the year in which cost certification is undertaken > INR 3 crores (Old rule- Rs. 10 crores).
2026-27 and shall continue to apply for subsequent block periods, unless modified. However, for transactions other than IT services, the SH application in Form No. 49 will still need to be filed for each individual year.
Further, with updates to the SH Rules as per Budget 2026, the corresponding changes have been incorporated in the SH rates in the draft Rules:
| Particulars | PLI/Base | Old rate | New rate |
|---|---|---|---|
| 1. Software development service | Operating profit / Operating expense (OP/OE) | 17% if transaction value ≤ INR 100 crores, 18% if transaction value > INR 100 crores but ≤ INR 300 crores |
Consolidated rate of 15.5% for IT services, if aggregate operating revenue ≤ INR 2,000 crores in the tax year |
| 2. IT enabled services | |||
| 3. Knowledge processing outsourcing services | |||
| 4. Contract R&D relating to software development | |||
| 5. Data centre services | OP/OE | – | |
| 6. Eligible business of storage of components in a bonded warehouse for sale to a contract manufacturer | Gross Receipts | – | Profits and gains chargeable to tax shall be ≥ 2% |
New / Updated definitions
The following definitions have been included in connection with SH in the new Rules:
Data centre and Data centre services, Contract manufacturer, Custom bonded area, Eligible assessee, Eligible business, Gross receipts and Specified electronic goods in connection with the business activity of storage of components in a warehouse in a custom bonded area for sale to a contract manufacturer.
Key considerations
More clarity is needed on whether SH for IT services can be opted for a period shorter than five years, or if only a continuous 5 year term is permitted. More guidance is also required on whether, if the assessee withdraws from the Safe Harbour regime for IT services during the 5 year period, such withdrawal will have retrospective effect or apply only prospectively to future years. As the cost allocation certificate for low value-adding services must be filed together with the SH form, it should be obtained in advance. Timely coordination with the AE’s location will be required to obtain the certificate. Under the current and prior SH Rules, five factors must be assessed to determine whether an Assessee qualifies as an eligible Assessee with insignificant risk. It remains to be seen how this will be implemented in practice, in the case of IT service providers where the verification process has now become automated.
About us
VSTN Consultancy is a Global Transfer Pricing firm with extensive expertise in the field of international taxation and transfer pricing. VSTN Consultancy has been awarded by International Tax Review (ITR) as Best Newcomer in Asia Pacific – 2024 and is ranked as one of the recommended transfer pricing firms. VSTN has also been nominated in 9 Categories under APAC, EMEA and Middle East Region ITR awards 2025. VSTN has its offices in India and Dubai.
Nithya Srinivasan, Founder of VSTN Consultancy, was named Middle East Transfer Pricing Practice Leader of the Year, recognizing her outstanding leadership and contribution to the profession. VSTN also received the Best Newcomer in the Middle East award from International Tax Review, showcasing its rapid growth and excellence in global transfer pricing advisory.
VSTN Consultancy has been honored with the Best Global Transfer Pricing Consultancy 2025 – India award at the prestigious Wealth & Finance Management Consulting Awards 2025.
Our offering spans the end-to-end Transfer Pricing value chain, including design of intercompany policy and drafting of Interco agreement, ensuring effective implementation of the Transfer Pricing policy, year-end documentation and certification, BEPS related compliances (including advisory, Masterfile, Country by Country report), safe harbour filing, audit defense before all forums and dispute prevention mechanisms such as Advance Pricing agreement. VSTNs senior partners have been ranked in ITR in the list of recognized Practitioners.
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